Chaetoceros gracilis

[Archaea] [Bacteria] [Eukaryota] [Stramenopiles] [Rhodophyta] [Viruses] [Metazoa] [Viridiplantae] [Embryophyta] [Fungi] [Others]
[Lower Rank of Stramenopiles] [Lower Rank of Rhodophyta]

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1

name	gene	Scaffold	start	end	len.	fpkm	BlastHit	Title	aa_len.	NC025310_location
rpl20_131	rpl20	scaffold00131	37	381	345	0	YP_009092941.1	ribosomal protein L20	114	61736..62080
rpl35_131	rpl35	scaffold00131	391	585	195	0	YP_009092940.1	ribosomal protein L35	64	61533..61727
psaE_131	psaE	scaffold00131	861	1064	204	59.7592	YP_009092939.1	photosystem I subunit IV	67	61065..61268
ftsH_131	ftsH	scaffold00131	1228	3153	1926	0.247981	YP_009092938.1	putative plastid division protein	641	complement(58982..60907)
rps14_131	rps14	scaffold00131	3315	3617	303	1.72663	YP_009092937.1	ribosomal protein S14	100	complement(58512..58814)
psaM_131	psaM	scaffold00131	3752	3844	93	0	YP_009092936.1	photosystem I protein M	30	complement(58257..58349)
chlI_131	chlI	scaffold00131	3989	5050	1062	0.187067	YP_009092935.1	protochlorophyllide reductase magnesium chelatase subunit	353	complement(57061..58122)
secG_131	secG	scaffold00131	5071	5283	213	0.336934	YP_009092934.1	preprotein translocase SecG subunit	70	complement(56837..57049)
trnD-GUC_131	trnD-GUC	scaffold00131	5356	5429	74	0	20964597	tRNA-Asp	0	56685..56758
trnS-GCU_131	trnS-GCU	scaffold00131	5495	5580	86	0	20964617	tRNA-Ser	0	56539..56624
trnI-CAU_131	trnI-CAU	scaffold00131	5606	5678	73	0	20964596	tRNA-Ile	0	56440..56512
ycf33_131	ycf33	scaffold00131	5823	6017	195	0.940866	YP_009092933.1	hypothetical protein Ycf33	64	complement(56083..56277)
trnY-GUA_131	trnY-GUA	scaffold00131	6045	6126	82	0	20964595	tRNA-Tyr	0	55990..56071
trnV-UAC_131	trnV-UAC	scaffold00131	6277	6342	66	0	20964594	tRNA-Val	0	complement(55791..55856)
trnR-UCU_131	trnR-UCU	scaffold00131	6356	6426	71	0	20964593	tRNA-Arg	0	complement(55707..55777)
rbcS_131	rbcS	scaffold00131	6585	7004	420	9.5422	YP_009092932.1	rbcS	139	55123..55542
rbcL_131	rbcL	scaffold00131	7041	8513	1473	2.39955	YP_009092931.1	rbcL	490	53614..55086
sufB_131	sufB	scaffold00131	8783	10243	1461	13.1071	YP_009092930.1	iron-sulfur cluster formation ABC transporter	486	complement(51876..53336)
sufC_131	sufC	scaffold00131	10243	10995	753	7.32789	YP_009092929.1	iron-sulfur cluster formation ABC transporter	250	complement(51124..51876)
atpI_131	atpI	scaffold00131	11102	11830	729	2.00323	YP_009092928.1	ATP synthase CF0 subunit IV	242	complement(50289..51017)
atpH_131	atpH	scaffold00131	11896	12144	249	12.5118	YP_009092927.1	ATP synthase CF0 subunit III	82	complement(49975..50223)
atpG_131	atpG	scaffold00131	12230	12700	471	3.36054	YP_009092926.1	ATP synthase CF0 B' subunit	156	complement(49407..49877)
atpF_131	atpF	scaffold00131	12762	13301	540	2.18112	YP_009092925.1	ATP synthase CF0 subunit I	179	complement(48806..49345)
atpD_131	atpD	scaffold00131	13298	13861	564	0.388874	YP_009092924.1	ATP synthase CF1 delta subunit	187	complement(48246..48809)
atpA_131	atpA	scaffold00131	13908	15410	1503	2.46733	YP_009092923.1	ATP synthase CF1 alpha subunit	502	complement(46693..48201)
psbB_131	psbB	scaffold00131	15623	17152	1530	1.26486	YP_009092922.1	photosystem II CP47 chlorophyll apoprotein	509	complement(44973..46502)
psbT_131	psbT	scaffold00131	17203	17298	96	0	YP_009092921.1	photosystem II protein T	31	complement(44827..44922)
psbN_131	psbN	scaffold00131	17338	17469	132	7.86608	YP_009092920.1	photosystem II protein N	43	44659..44790
psbH_131	psbH	scaffold00131	17792	17995	204	4.74908	YP_009092919.1	photosystem II phosphoprotein	67	complement(44133..44336)
petN_131	petN	scaffold00131	18071	18160	90	0	YP_009092918.1	cytochrome b6/f complex subunit VIII	29	complement(43954..44043)
petM_131	petM	scaffold00131	18199	18327	129	11.7962	YP_009092917.1	cytochrome b6-f complex subunit VII	42	complement(43787..43915)
psaJ_131	psaJ	scaffold00131	18401	18526	126	6.67021	YP_009092916.1	photosystem I subunit IX	41	43592..43717
psaF_131	psaF	scaffold00131	18570	19127	558	0.730226	YP_009092915.1	photosystem I subunit III	185	42996..43553
ycf90_131	ycf90	scaffold00131	19413	20594	1182	0.0546738	YP_009092914.1	hypothetical protein Ycf90	468	complement(41395..42801)
psbJ_131	psbJ	scaffold00131	20815	20934	120	8.69324	YP_009092913.1	photosystem II protein J	39	41161..41280
psbL_131	psbL	scaffold00131	20958	21074	117	30.1	YP_009092912.1	photosystem II protein L	38	41020..41136
psbF_131	psbF	scaffold00131	21104	21235	132	18.3542	YP_009092911.1	photosystem II protein VI	43	40859..40990
psbE_131	psbE	scaffold00131	21256	21510	255	2.35171	YP_009092910.1	photosystem II protein V	84	40584..40838
trnG-UCC_131	trnG-UCC	scaffold00131	21564	21634	71	0	20964592	tRNA-Gly	0	40459..40529
ycf4_131	ycf4	scaffold00131	21681	22226	546	0.189037	YP_009092909.1	photosystem I assembly protein Ycf4	181	39867..40412
petL_131	petL	scaffold00131	22248	22343	96	19.055	YP_009092908.1	cytochrome b6/f complex subunit VI	31	39758..39853
psaL_131	psaL	scaffold00131	22515	22970	456	5.19533	YP_009092907.1	photosystem I protein subunit XI	151	complement(39126..39581)
cbbX_131	cbbX	scaffold00131	23072	23942	871	1.60635	YP_009092906.1	rubisco expression protein	292	complement(38145..39023)
ycf39_131	ycf39	scaffold00131	23973	24932	960	0.254926	YP_009092905.1	hypothetical protein Ycf39	319	complement(37154..38113)
ycf41_131	ycf41	scaffold00131	25039	25266	228	0	YP_009092904.1	hypothetical protein Ycf41	107	complement(36736..37059)
psbI_131	psbI	scaffold00131	25352	25468	117	0	YP_009092903.1	photosystem II protein I	38	complement(36538..36654)
trnE-UUC_131	trnE-UUC	scaffold00131	25558	25630	73	0	20964591	tRNA-Glu	0	36330..36402
trnG-GCC_131	trnG-GCC	scaffold00131	25661	25732	72	0	20964590	tRNA-Gly	0	36229..36300
psbZ_131	psbZ	scaffold00131	25853	26038	186	0.566684	YP_009092902.1	photosystem II protein Z	61	35924..36109
ycf12_131	ycf12	scaffold00131	26092	26196	105	0	YP_009092901.1	hypothetical protein Ycf12	34	35771..35875
trnK-UUU_131	trnK-UUU	scaffold00131	26403	26474	72	0	20964589	tRNA-Lys	0	complement(35505..35576)
psbC_131	psbC	scaffold00131	26572	27987	1416	0.64362	YP_009092900.1	photosystem II CP43 chlorophyll apoprotein	471	33995..35410
psbD_131	psbD	scaffold00131	27935	28990	1056	1.19314	YP_009092899.1	photosystem II protein D2	351	32992..34047
psaI_131	psaI	scaffold00131	29244	29354	111	13.7276	YP_009092898.1	photosystem I subunit VIII	36	32657..32767
psbK_131	psbK	scaffold00131	29543	29677	135	0	YP_009092897.1	photosystem II protein K	44	complement(32322..32456)
petG_131	petG	scaffold00131	29818	29928	111	0	YP_009092896.1	cytochrome b6/f complex subunit V	36	complement(32077..32187)
rpl12_131	rpl12	scaffold00131	29974	30360	387	0.178283	YP_009092895.1	ribosomal protein L12	128	31556..31942
rpl1_131	rpl1	scaffold00131	30392	31084	693	0.131749	YP_009092894.1	ribosomal protein L1	230	30821..31513
rpl11_131	rpl11	scaffold00131	31124	31549	426	0	YP_009092893.1	ribosomal protein L11	141	30363..30788
trnW-CCA_131	trnW-CCA	scaffold00131	31750	31822	73	0	20964588	tRNA-Trp	0	30100..30172
dnaB_131	dnaB	scaffold00131	31928	33253	1326	0.00952643	YP_009092892.1	DNA replication helicase	454	complement(28648..30012)
trnF-GAA_131	trnF-GAA	scaffold00131	33265	33337	73	0	20964587	tRNA-Phe	0	28574..28646
psbX_131	psbX	scaffold00131	33719	33835	117	0	YP_009092891.1	photosystem II protein X	38	complement(28086..28202)
ycf66_131	ycf66	scaffold00131	33888	34180	293	1.89711	YP_009092890.1	hypothetical protein Ycf66	99	complement(27733..28032)
psbV_131	psbV	scaffold00131	34246	34737	492	1.16235	YP_009092889.1	photosystem II cytochrome c550	163	complement(27189..27680)
trnR-ccg_131	trnR-ccg	scaffold00131	34837	34909	73	0	20964585	tRNA-Arg	0	complement(26952..27024)
trnM-CAU_131	trnM-CAU	scaffold00131	35313	35391	79	0	20964583	tRNA-Met	0	complement(26510..26594)
rpl19_131	rpl19	scaffold00131	35473	35834	362	0.0689052	YP_009092888.1	ribosomal protein L19	120	complement(26066..26428)
petF_131	petF	scaffold00131	35967	36261	295	0.348895	YP_009092887.1	ferredoxin	99	complement(25636..25935)
petA_131	petA	scaffold00131	36316	37260	945	0.245663	YP_009092886.1	cytochrome f	314	24631..25575
tatC_131	tatC	scaffold00131	37288	38028	741	0.0599428	YP_009092885.1	sec-independent protein translocase-like protein	246	23857..24597
atpE_131	atpE	scaffold00131	38168	38569	402	0.21946	YP_009092884.1	ATP synthase CF1 epsilon subunit	133	23340..23741
atpB_131	atpB	scaffold00131	38585	40012	1428	0.65475	YP_009092883.1	ATP synthase CF1 beta subunit	475	21898..23325
ycf3_131	ycf3	scaffold00131	40178	40708	531	0.164845	YP_009092882.1	hypothetical protein Ycf3	176	21204..21734
trnT-UGU_131	trnT-UGU	scaffold00131	40840	40911	72	0	20964582	tRNA-Thr	0	21003..21074
psaB_131	psaB	scaffold00131	41075	43276	2202	0.822581	YP_009092881.1	photosystem I P700 apoprotein A2	733	18626..20827
psaA-fragment_131	psaA-fragment	scaffold00131	41234	42517	1284	0.000000567182	-	-	0	-
psaA_131	psaA	scaffold00131	43345	45603	2259	1.43846	YP_009092880.1	photosystem I P700 apoprotein A1	752	16298..18556
psaB-fragment_131	psaB-fragment	scaffold00131	43489	44826	1338	0.0000000887054	-	-	0	-
rps18_131	rps18	scaffold00131	45760	45978	219	1.21802	YP_009092879.1	ribosomal protein S18	72	15927..16145
rpl33_131	rpl33	scaffold00131	45982	46176	195	1.88173	YP_009092878.1	ribosomal protein L33	64	15729..15923
rps20_131	rps20	scaffold00131	46382	46654	273	0	YP_009092877.1	ribosomal protein S20	93	complement(15240..15521)
rpoB_131	rpoB	scaffold00131	46771	51001	4231	0.00794259	YP_009092876.1	RNA polymerase beta subunit	1413	complement(10858..15099)
rpoC1_131	rpoC1	scaffold00131	51015	53409	2395	0.0146102	YP_009092875.1	RNA polymerase beta	801	complement(8435..10840)
rpoC2_131	rpoC2	scaffold00131	53447	57628	4182	0.0214414	YP_009092874.1	RNA polymerase beta' subunit	1415	complement(4159..8406)
rps2_131	rps2	scaffold00131	57795	58465	671	0	YP_009092873.1	ribosomal protein S2	227	complement(3388..4071)
trnfM-CAU_131	trnfM-CAU	scaffold00131	58599	58670	72	0	20964581	tRNA-Met	0	complement(3195..3266)
psaD_131	psaD	scaffold00131	58755	59174	420	0.251111	YP_009092872.1	photosystem I subunit II	139	complement(2690..3109)
trnS-UGA_131	trnS-UGA	scaffold00131	59209	59295	87	0	20964580	tRNA-Ser	0	complement(2571..2657)
petB_131	petB	scaffold00131	59356	60003	648	0.193628	YP_009092871.1	cytochrome b6	215	complement(1865..2512)
petD_131	petD	scaffold00131	60055	60537	483	0.116166	YP_009092870.1	cytochrome b6/f complex subunit IV	160	complement(1330..1812)
ycf45_131	ycf45	scaffold00131	60696	61694	999	0.834788	YP_009092869.1	hypothetical protein Ycf45	454	complement(join(116263..116459,1..1168))
ycf35_168	ycf35	scaffold00168	3	380	378	0.938037	YP_009092945.1	hypothetical protein Ycf35	125	complement(69615..69992)
rps16_168	rps16	scaffold00168	531	767	237	0.461419	YP_009092946.1	ribosomal protein S16	78	complement(70136..70372)
rps4_168	rps4	scaffold00168	844	1457	614	0.236071	YP_009092947.1	ribosomal protein S4	204	complement(70453..71067)
trnH-GUG_168	trnH-GUG	scaffold00168	1518	1591	74	0	20964604	tRNA-His	0	complement(71127..71200)
thiS_168	thiS	scaffold00168	1687	1881	195	0	YP_009092948.1	thiamine biosynthesis protein S	70	71278..71490
syfB_168	syfB	scaffold00168	1932	4022	2091	0.0226252	YP_009092949.1	phenylalanine-tRNA ligase beta subunit	704	complement(71518..73632)
psb28_168	psb28	scaffold00168	4051	4396	346	0.306499	YP_009092950.1	photosystem II protein W	115	complement(73660..74007)
trnQ-UUG_168	trnQ-UUG	scaffold00168	4493	4564	72	0	20964605	tRNA-Gln	0	complement(74076..74147)
trnR-ACG_168	trnR-ACG	scaffold00168	4595	4667	73	0	20964606	tRNA-Arg	0	complement(74178..74250)
groEL_168	groEL	scaffold00168	4818	6416	1599	0.114853	YP_009092951.1	chaperonin GroEL	532	74407..76005
dnaK_168	dnaK	scaffold00168	6498	8274	1777	1.76494	YP_009092952.1	heat shock protein 70	610	complement(76031..77863)
rpl3_168	rpl3	scaffold00168	8520	9143	624	0	YP_009092953.1	ribosomal protein L3	207	78121..78744
rpl4_168	rpl4	scaffold00168	9188	9834	647	0	YP_009092954.1	ribosomal protein L4	215	78788..79435
rpl23_168	rpl23	scaffold00168	9827	10135	309	0	YP_009092955.1	ribosomal protein L23	102	79428..79736
rpl2_168	rpl2	scaffold00168	10165	10992	828	0.0171775	YP_009092956.1	ribosomal protein L2	275	79766..80593
rps19_168	rps19	scaffold00168	11035	11313	279	0.410359	YP_009092957.1	ribosomal protein S19	92	80636..80914
ycf88_168	ycf88	scaffold00168	11326	11721	396	0	YP_009092958.1	hypothetical protein Ycf88	131	80927..81322
rpl22_168	rpl22	scaffold00168	11872	12218	347	0	YP_009092959.1	ribosomal protein L22	115	81449..81796
rps3_168	rps3	scaffold00168	12260	12904	645	0	YP_009092960.1	ribosomal protein S3	214	81838..82482
rpl16_168	rpl16	scaffold00168	12939	13349	411	0	YP_009092961.1	ribosomal protein L16	138	82519..82935
rpl29_168	rpl29	scaffold00168	13359	13607	249	0	YP_009092962.1	50S ribosomal protein L29	88	82939..83205
rps17_168	rps17	scaffold00168	13654	13908	255	0	YP_009092963.1	ribosomal protein S17	84	83237..83491
rpl14_168	rpl14	scaffold00168	13921	14286	366	0.0671999	YP_009092964.1	ribosomal protein L14	121	83504..83869
rpl24_168	rpl24	scaffold00168	14296	14532	237	0	YP_009092965.1	ribosomal protein L24	81	83870..84115
rpl5_168	rpl5	scaffold00168	14537	15253	717	0.0836917	YP_009092966.1	ribosomal protein L5	238	84120..84836
rps8_168	rps8	scaffold00168	15282	15680	399	0	YP_009092967.1	ribosomal protein S8	132	84866..85264
rpl6_168	rpl6	scaffold00168	15699	16232	534	0.0326656	YP_009092968.1	ribosomal protein L6	178	85283..85819
rpl18_168	rpl18	scaffold00168	16301	16707	407	0.106986	YP_009092969.1	ribosomal protein L18	135	85878..86285
rps5_168	rps5	scaffold00168	16749	17284	536	0	YP_009092970.1	ribosomal protein S5	178	86313..86849
secY_168	secY	scaffold00168	17308	18573	1266	0.0402666	YP_009092971.1	preprotein translocase subunit SecY	421	86887..88152
rpl36_168	rpl36	scaffold00168	18607	18720	114	0	YP_009092972.1	ribosomal protein L36	37	88188..88301
rps13_168	rps13	scaffold00168	18742	19113	372	0.129575	YP_009092973.1	ribosomal protein S13	123	88323..88694
rps11_168	rps11	scaffold00168	19159	19551	393	0	YP_009092974.1	ribosomal protein S11	130	88740..89132
rpoA_168	rpoA	scaffold00168	19591	20532	942	0.0435295	YP_009092975.1	RNA polymerase alpha subunit	313	89172..90113
rpl13_168	rpl13	scaffold00168	20559	20987	429	0.0963598	YP_009092976.1	ribosomal protein L13	143	90140..90571
rps9_168	rps9	scaffold00168	21014	21409	396	0.0566054	YP_009092977.1	ribosomal protein S9	134	90587..90991
rpl31_168	rpl31	scaffold00168	21435	21646	212	0	YP_009092978.1	ribosomal protein L31	71	91011..91226
rps12_168	rps12	scaffold00168	21684	22052	369	0	YP_009092979.1	ribosomal protein S12	123	91260..91631
rps7_168	rps7	scaffold00168	22151	22621	471	0.283419	YP_009092980.1	ribosomal protein S7	156	91722..92192
tufA_168	tufA	scaffold00168	22708	23937	1230	0.114633	YP_009092981.1	elongation factor Tu	409	92272..93501
rps10_168	rps10	scaffold00168	23950	24273	324	0	YP_009092982.1	ribosomal protein S10	107	93514..93837
trnL-UAA_168	trnL-UAA	scaffold00168	24384	24470	87	0	20964607	tRNA-Leu	0	complement(94009..94095)
trnC-GCA_168	trnC-GCA	scaffold00168	24545	24615	71	0	20964608	tRNA-Cys	0	complement(94169..94239)
clpC_168	clpC	scaffold00168	24803	27445	2643	0.71735	YP_009092983.1	Clp protease ATP binding subunit	882	94426..97074
thiG_168	thiG	scaffold00168	27524	28300	777	0	YP_009092984.1	thiamin biosynthesis protein G	269	complement(97153..97962)
trnN-GUU_168	trnN-GUU	scaffold00168	28338	28409	72	0	20964609	tRNA-Asn	0	complement(97984..98055)
rps6_168	rps6	scaffold00168	28495	28806	312	0	YP_009092985.1	ribosomal protein S6	103	complement(98131..98442)
ccsA_168	ccsA	scaffold00168	28987	29925	939	0.0291387	YP_009092986.1	cytochrome c heme attachment protein	312	98673..99611
psaC_168	psaC	scaffold00168	29974	30219	246	0.813953	YP_009092987.1	photosystem I subunit VII	81	complement(99656..99901)
psbA_168	psbA	scaffold00168	30451	31533	1083	29.3585	YP_009092988.1	photosystem II protein D1	360	complement(100127..101209)
psbD_168	psbD	scaffold00168	30865	30951	87	0.000316166	YP_009092899.1	photosystem II protein D2	351	32992..34047
ccs1_168	ccs1	scaffold00168	31624	32892	1269	0	YP_009092989.1	c-type cytochrome biogenesis protein	422	complement(101297..102565)
ycf46_168	ycf46	scaffold00168	32912	34402	1491	0.0498081	YP_009092990.1	hypothetical protein Ycf46	496	complement(102578..104068)
rpl34_168	rpl34	scaffold00168	34516	34662	147	7.78938	YP_009092991.1	ribosomal protein L34	48	complement(104189..104335)
secA_168	secA	scaffold00168	34726	37200	2475	0.0469822	YP_009092992.1	preprotein-translocase subunit a	883	complement(104406..107057)
rpl27_168	rpl27	scaffold00168	37396	37647	252	0	YP_009092993.1	ribosomal protein L27	83	complement(107081..107332)
rpl21_168	rpl21	scaffold00168	37675	37991	317	0	YP_009092994.1	ribosomal protein L21	105	complement(107356..107673)
rbcR_168	rbcR	scaffold00168	38082	39010	929	0	YP_009092995.1	rubisco operon transcription regulator	309	complement(107765..108694)
trnL-UAG_168	trnL-UAG	scaffold00168	39064	39145	82	0	20964610	tRNA-Leu	0	complement(108718..108798)
rpl32_168	rpl32	scaffold00168	39215	39319	105	0	YP_009092996.1	ribosomal protein L32	54	complement(108853..109017)
rpl32_270	rpl32	scaffold00270	22	59	38	0	YP_009092996.1	ribosomal protein L32	54	complement(108853..109017)
psbY_270	psbY	scaffold00270	173	283	111	13.7276	YP_009092944.1	photosystem II protein Y	36	69375..69485
rrn5_270	rrn5	scaffold00270	489	614	126	280.149	20964611	5S ribosomal RNA	0	complement(109438..109563)
rnl_270	rnl	scaffold00270	670	3533	2864	168.305	20964612	large subunit ribosomal RNA	0	complement(109645..112507)
trnA-UGC_270	trnA-UGC	scaffold00270	3619	3691	73	0	20964613	tRNA-Ala	0	complement(112578..112650)
trnI-GAU_270	trnI-GAU	scaffold00270	3694	3767	74	0	20964614	tRNA-Ile	0	complement(112653..112726)
rns_270	rns	scaffold00270	3831	5309	1479	132.492	20964615	small subunit ribosomal RNA	0	complement(112790..114266)
ycf89_270	ycf89	scaffold00270	5636	6511	876	0	YP_009092943.1	hypothetical protein Ycf89	338	63123..64139
trnP-UGG_270	trnP-UGG	scaffold00270	6802	6875	74	0	20964616	tRNA-Pro	0	complement(115727..115800)
acpP_270	acpP	scaffold00270	7046	7279	234	0	YP_009092942.1	acyl carrier protein	77	62400..62633
ycf45_270	ycf45	scaffold00270	7337	7505	169	0	YP_009092869.1	hypothetical protein Ycf45	454	complement(join(116263..116459,1..1168))